As a Software Engineer (2018 - 2019)

Chest Vessel Segmentation

3D deep learning model training for chest vessel segmentation and atherosclerosis identification using MRI data.

Integrated Tumor Segmentation Solution Using MRI Scan as Input

Dockerized solution for tumor segmentation in lung cancer with 3D bounding box visualization output.

Lung Cancer Prediction Based on Patient Metadata

Lung cancer and subtype prediction using XGBoost based on metadata from 1658 patients.

Automatic Identification of Rhythm/Morphology Abnormalities in 12-Lead ECGs

Model training and network tuning (ResNet variant) to identify abnormal signals in 12-lead ECG data from 7191 samples.

Colorectal Surgical Phase Detection Based on Endoscope Video Records

Prediction of colorectal surgical phases using video and sensor data.

As a teaching assistant, I coached students these projects. (2018 - 2019)

Automatic System Providing Matching Images for A Given Article (NLP)

An automatic system finding matching images for a given piece of text (articles, news, URL, etc.).
First generating keywords for a given article written in natural language; then returning images with matching keywords. Image keywords are generated by deep learning.

Information Highlighting Based on Impact from A Given Text (NLP)

For a given article or URL, highlight content causing positive and negative impacts on a certain topic in different colors.

Identification of Genomic Sites Affecting Oil Production in Soybeans

Using single-nucleotide polymorphism (SNP) information as features to predict oil production in soybean strains with gradient boosting methods (XGBoost, LightGBM, etc.).

Tumor Segmentation in Lung Cancer

Train and tune a deep learning model to segment suspicious regions in potential lung cancer cases using medical MRI data.

As a student  : )

Microcalsification Segmentation Using Deep Learning

Deep learning model training and prediction (using U-Net architecture) to identify microcalcification from mammography

Identifying Novel Genes Using Ribosomal Profiling and RNA-Seq Data

Potential genes discovery by investigating previously unannotated regions in genome using ribosomal profiling and RNA-Seq data.

Differential Expression Analysis

Alignment, mapping to discover function of introns and revolutionary significance in several species from fungus to high mammal through bioinformatic methods.

As someone who enjoys coding and trying new techs.

Isometric Tiles

Inspired by game of life. Blue and red blocks may move, multiply or decease but not too much interactions were implmented for now.

First written in Python and then ported to C++ for speed.

GitHub (Python 3)

GitHub (C++)

Enigma

An emulation of Enigma machine M3 implemented in Python 3. 

After reading about this type of encryption invented almost one century ago I was fascinated about it; as well as the story that our AI patriarch Dr. Turing decoded those encrypted messages.

So I decided to realize it with codes. It was pretty object-oriented with the machine and components (rotors and reflectors) realized in classes.

GitHub Repo

Raycasting

Rendering method that fakes a 3D space on screen by using only a 2D array, achieved with geometric tricks. The game Wolfenstein 3D (1992) used this rendering method.

Written in Python 3 and PyQt5. 

GitHub Repo

Soundboard App with Flutter

A sound board app with audio mixing, shuffling, video playback and motion control functions. Initially written in Swift 5.0 and later re-written in a multi-platform framework (Flutter + Dart).

Originally a prank but later on became an awfully fun project.

* All images used in the project are royalty free.
Animations by Adobe After Effects
Icon by Affinity Photo.

GitHub Repo

Original iOS App writen in Swift 5.

Re-implementation using Flutter. Showing the macOS build.

Windows 11 build. Also has Linux binaries enabled by GitHub Actions.

Online Audio Cutter

A web service enabling audio extraction for given time intervals from pre-defined videos. Previously submitted requests are shown on the right side and are available for download. I use this service to extract audio fragments for soundboard App mentioned above.

Achieved with Dash.

GitHub Repo